par Taminau, Jonatan;Steenhoff, David;Meganck, Stijn;Lazar, Cosmin;De Schaetzen, Virginie 
;Nowe, Ann ;Coletta, Alain ;Duque, Robin ;Molter, Colin ;Bersini, Hugues ;Weiss, David
Référence Bioinformatics, 27, 22, page (3204-3205), btr529
Publication Publié, 2011-11
;Nowe, Ann ;Coletta, Alain ;Duque, Robin ;Molter, Colin ;Bersini, Hugues ;Weiss, David Référence Bioinformatics, 27, 22, page (3204-3205), btr529
Publication Publié, 2011-11
Article révisé par les pairs
| Résumé : | Microarray technology has become an integral part of biomedical research and increasing amounts of datasets become available through public repositories. However, re-use of these datasets is severely hindered by unstructured, missing or incorrect biological samples information; as well as the wide variety of preprocessing methods in use. The inSilicoDb R/Bioconductor package is a command-line front-end to the InSilico DB, a web-based database currently containing 86 104 expert-curated human Affymetrix expression profiles compiled from 1937 GEO repository series. The use of this package builds on the Bioconductor project's focus on reproducibility by enabling a clear workflow in which not only analysis, but also the retrieval of verified data is supported. © The Author 2011. Published by Oxford University Press. All rights reserved. |
