Articles dans des revues avec comité de lecture (47)
  1. 37. Thomas-Chollier, M., Darbo, E., Herrmann, C., Defrance, M., Thieffry, D., & van Helden, J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nature Protocols (Online), 7(8), 1551-1568. doi:10.1038/nprot.2012.088
  2. 38. Volkmar, M., Dedeurwaerder, S., Andrade Da Cunha, D., Ndlovu, M. N., Defrance, M., Deplus, R., Calonne, E., Volkmar, U., Igoillo Esteve, M., Naamane, N., Del Guerra, S., Masini, M., Bugliani, M., Marchetti, P., Cnop, M., Eizirik, D. L., & Fuks, F. (2012). DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients. EMBO journal, 31(6), 1405-1426. doi:10.1038/emboj.2011.503
  3. 39. Thomas-Chollier, M., Herrmann, C., Defrance, M., Sand, O., Thieffry, D., & van Helden, J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic acids research, 40(4), e31. doi:10.1093/nar/gkr1104
  4. 40. Dedeurwaerder, S., Desmedt, C., Calonne, E., Singhal, S. K., Haibe-Kains, B., Defrance, M., Michiels, S., Volkmar, M., Deplus, R., Luciani, J., Lallemand, F., Larsimont, D., Toussaint, J., Haussy, S., Rothé, F., Rouas, G., Metzger, O., Majjaj, S., Saini, K., Putmans, P., Hames, G., Van Baren, N., Coulie, P. G., Piccart-Gebhart, M., Sotiriou, C., & Fuks, F. (2011). DNA methylation profiling reveals a predominant immune component in breast cancers. EMBO molecular medicine, 3(12), 726-741. doi:10.1002/emmm.201100801
  5. 41. Dedeurwaerder, S., Defrance, M., Calonne, E., Denis, H., Sotiriou, C., & Fuks, F. (2011). Evaluation of the Infinium Methylation 450K technology. Epigenomics, 3(6), 771-784. doi:10.2217/epi.11.105
  6. 42. Thomas-Chollier, M., Defrance, M., Medina-Rivera, A., Sand, O., Herrmann, C., Thieffry, D., & van Helden, J. (2011). RSAT 2011: regulatory sequence analysis tools. Nucleic acids research, 39(Web Server issue), W86-W91. doi:10.1093/nar/gkr377
  7. 43. Defrance, M., & van Helden, J. (2009). Info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling. Bioinformatics, 25(20), 2715-2722. doi:10.1093/bioinformatics/btp490
  8. 44. Thomas-Chollier, M., Sand, O., Turatsinze, J. V., Janky, R., Defrance, M., Vervisch, E., Brohée, S., & van Helden, J. (2008). RSAT: regulatory sequence analysis tools. Nucleic acids research, 36(Web Server issue), W119-W127. doi:10.1093/nar/gkn304
  9. 45. Defrance, M., Janky, R., Sand, O., & van Helden, J. (2008). Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences. Nature Protocols (Online), 3(10), 1589-1603. doi:10.1038/nprot.2008.98
  10. 46. Turatsinze, J. V., Thomas-Chollier, M., Defrance, M., & van Helden, J. (2008). Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules. Nature Protocols (Online), 3(10), 1578-1588. doi:10.1038/nprot.2008.97
  11. 47. Defrance, M., & Touzet, H. (2006). Predicting transcription factor binding sites using local over-representation and comparative genomics. BMC bioinformatics, 7, 396. doi:10.1186/1471-2105-7-396
    12.   Articles dans des revues sans comité de lecture (2)
  12. 1. Piron, A., Szymczak, F., De Oliveira Alvelos, M., Defrance, M., Lenaerts, T., Eizirik, D. L., & Cnop, M. (2022). RedRibbon: A new rank-rank hypergeometric overlap pipeline to compare gene and transcript expression signatures. BioRxiv. doi:https://doi.org/10.1101/2022.08.31.505818
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