Parties d'ouvrages collectifs (1)
  1. 1. Pucci, F., & Rooman, M. (2016). A little walk from physical to biological complexity: protein folding and stability. In About various kinds of interactions: published in honor of Philippe Spindel’s 65th birthday. UMons University Press: edited by N. Boulanger and S. Detournay.
    2.   Articles dans des revues avec comité de lecture (71)
  2. 1. de Witte, B., Karamaoun, C., Hermans, P., Tarabichi, M., Pucci, F., & Rooman, M. (2026). Linking somatic mutations in cancer to the electronic properties of DNA. BMC genomics, 27(1). doi:10.1186/s12864-026-12879-5
  3. 2. Kretsch, R. C., Posani, E., Baulin, E. F., Bujnicki, J. M., Bussi, G., Cheatham, T., Chen, S.-J., Elofsson, A., Farsani, M. A., Fisher, O., Gromiha, M., Gupta, A., Hamada, M., Harini, K., Hu, G., Huang, D. Q., Iwakiri, J., Jain, A., Kagaya, Y., Kihara, D., Kmiecik, S., Krishnan, S. R., Kurisaki, I., Languin‐Cattoën, O., Li, J., Li, S., Malekzadeh, K., Nakamura, T., Ni, W., Nithin, C., Palo, M. Z., Park, J. W., Pilla, S. P., Poblete, S., Pucci, F., Punuru, P., Saha, A., Sato, K., Srivastava, A., Terashi, G., Tugolukova, E., Verburgt, J., Wuyun, Q., Zerze, G., Zhang, K., Zhang, S., Zheng, W., Zhou, Y., Chiu, W., Case, D. A., & Das, R. (2026). Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16. Proteins, 94(1), 381-402. doi:10.1002/prot.70079
  4. 3. Attanasio, S., Kwasigroch, J.-M., Rooman, M., & Pucci, F. (2025). SOuLMuSiC, a novel tool for predicting the impact of mutations on protein solubility. Scientific reports, 15(1), 27531. doi:10.1038/s41598-025-11326-x
  5. 4. Cia Beriain, G., Li, D., Poblete, S., Rooman, M., & Pucci, F. (2025). AbAgym: a well-curated dataset for the mutational analysis of antibody–antigen complexes. mAbs, 17(1). doi:10.1080/19420862.2025.2592421
  6. 5. Li, D., Pucci, F., & Rooman, M. (2025). PInteract: Detecting Aromatic-Involving Motifs in Proteins and Protein-Nucleic Acid Complexes. Biomolecules, 15(8). doi:10.3390/biom15081204
  7. 6. Tsishyn, M., Hermans, P., Rooman, M., & Pucci, F. (2025). Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins. Bioinformatics, 41(6). doi:10.1093/bioinformatics/btaf322
  8. 7. Jain, S., Trinidad, M., Nguyen, T. B., Jones, K., Neto, S. D., Ge, F., Glagovsky, A., Jones, C., Moran, G., Wang, B., Rahimi, K., Çalıcı, S. Z., Cedillo, L., Berardelli, S., Özden, B., Chen, K., Katsonis, P., Williams, A., Lichtarge, O., Rana, S., Pradhan, S., Srinivasan, R., Sajeed, R., Joshi, D., Faraggi, E., Jernigan, R., Kloczkowski, A., Xu, J., Song, Z., Özkan, S., Padilla, N., de la Cruz, X., Acuna-Hidalgo, R., Grafmüller, A., Barrón, L. T. J., Manfredi, M., Savojardo, C., Babbi, G., Martelli, P. L., Casadio, R. R., Sun, Y., Zhu, S., Shen, Y., Pucci, F., Rooman, M., Cia, G., Raimondi, D., Hermans, P., Kwee, S., Chen, E., Astore, C., Kamandula, A., Pejaver, V., Ramola, R., Velyunskiy, M., Zeiberg, D., Mishra, R., Sterling, T., Goldstein, J. L., Lugo-Martinez, J., Kazi, S., Li, S., Long, K., Brenner, S. E., Bakolitsa, C., Radivojac, P., Suhr, D., Suhr, T., & Clark, W. T. (2025). Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A. Human genetics, 144(2-3), 295-308. doi:10.1007/s00439-025-02731-3
  9. 8. Rastogi, R., Chung, R., Li, S., Li, C., Lee, K., Woo, J., Kim, D. W., Keum, C., Babbi, G., Martelli, P. L., Savojardo, C., Casadio, R. R., Chennen, K., Weber, T. S., Poch, O., Ancien, F., Camperio Ciani, G., Pucci, F., Raimondi, D., Vranken, W., Rooman, M., Marquet, C., Olenyi, T., Rost, B., Andreoletti, G., Kamandula, A., Peng, Y., Bakolitsa, C., Mort, M., Cooper, D. N., Bergquist, T., Pejaver, V., Liu, X., Radivojac, P., Brenner, S. E., & Ioannidis, N. M. (2025). Critical assessment of missense variant effect predictors on disease-relevant variant data. Human genetics, 144(2-3), 281-293. doi:10.1007/s00439-025-02732-2
  10. 9. Upadhyay, U., Pucci, F., Herold, J., & Schug, A. (2025). NucleoSeeker—precision filtering of RNA databases to curate high-quality datasets. NAR Genomics and Bioinformatics, 7(1), lqaf021. doi:10.1093/nargab/lqaf021
  11. 10. Bu, F., Adam, Y., Adamiak, R., Antczak, M., de Aquino, B. R., Badepally, N. G., Batey, R., Baulin, E., Boinski, P., Boniecki, M., Bujnicki, J. M., Carpenter, K. L., Chacon, J., Chen, S.-J., Chiu, W., Cordero, P., Das, N. K., Das, R., Dawson, W., DiMaio, F., Ding, F., Dock-Bregeon, A.-C., Dokholyan, N., Dror, R., Dunin-Horkawicz, S., Eismann, S., Ennifar, E., Esmaeeli, R., Farsani, M. A., Ferré-D’Amaré, A., Geniesse, C., Ghanim, G., Guzman, H. V., Hood, I., Huang, L., Jain, D. S., Jaryani, F., Jin, L., Joshi, A., Karelina, M., Kieft, J., Kladwang, W., Kmiecik, S., Koirala, D., Kollmann, M., Kretsch, R., Kurciński, M., Li, J., Li, S., Magnus, M., Masquida, B., Moafinejad, N., Mondal, A., Mukherjee, S., Nguyen, T. H. D., Nikolaev, G., Nithin, C., Nye, G., Pandaranadar Jeyeram, I., Perez, A., Pham, P., Piccirilli, J. A., Pilla, S. P., Pluta, R., Poblete, S., Ponce-Salvatierra, A., Popenda, M., Popenda, L., Pucci, F., Rangan, R., Ray, A., Ren, A., Sarzynska, J., Sha, C. M., Stefaniak, F., Su, Z., Suddala, K., Szachniuk, M., Townshend, R., Trachman, R., Wang, J., Wang, W., Watkins, A., Wirecki, T., Xiao, Y., Xiong, P., Xiong, Y., Yang, J., Yesselman, J. D., Zhang, J., Zhang, Y., Zhang, Z., Zhou, Y., Zok, T., Zhang, D., Zhang, S., Żyła, A., Westhof, E., & Miao, Z. (2025). RNA-Puzzles Round V: blind predictions of 23 RNA structures. Nature methods, 22(2), 399-411. doi:10.1038/s41592-024-02543-9
  12. 11. Turina, M. P., Petrosino, M., Enriquez Sandoval, C., Novak, L., Pasquo, A., Alexov, E., Alladin, M. A., Ascher, D. B., Babbi, G., Bakolitsa, C., Casadio, R. R., Cheng, J., Fariselli, P., Folkman, L., Kamandula, A., Katsonis, P., Li, M., Li, D., Lichtarge, O., Mahmud, S., Martelli, P. L., Pal, D., Panday, S. K., Pires, D. E. V., Portelli, S., Pucci, F., Rodrigues, C. H. M., Rooman, M., Savojardo, C., Schwersensky, M., Shen, Y., Strokach, A. V., Sun, Y., Woo, J., Radivojac, P., Brenner, S. E., Chiaraluce, R., Consalvi, V., & Capriotti, E. (2025). Assessing the predicted impact of single amino acid substitutions in MAPK proteins for CAGI6 challenges. Human genetics. doi:10.1007/s00439-024-02724-8
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