Articles dans des revues avec comité de lecture (33)
  1. 1. Quarto, G., Li Greci, A., Bizet, M., Penning, A., Primac, I., Murisier, F., Garcia-Martinez, L., Borges, R. L., Gao, Q., Cingaram, P., Calonne, E., Hassabi, B., Hubert, C., Herpoel, A., Putmans, P., Mies, F., Martin, J., Van Der Linden, L., Dube, G., Kumar, P., Soin, R., Kumar, A., Misra, A., Lan, J., Paque, M., Gupta, Y. K., Blomme, A., Close, P., Esteve, P. O., Caine, E., Riching, K. M., Gueydan, C., Daniels, D. L., Pradhan, S., Shiekhattar, R., David, Y., Morey, L., Jeschke, J., Deplus, R., Collignon, E., & Fuks, F. (2025). Fine-tuning of gene expression through the Mettl3-Mettl14-Dnmt1 axis controls ESC differentiation. Cell, 188(4), 998-1018. doi:10.1016/j.cell.2024.12.009
  2. 2. Pinello, N., Song, R., Lee, Q., Calonne, E., Duan, K. L., Wong, E., Tieng, J., Mehravar, M., Rong, B., Lan, F., Roediger, B., Ma, C., Yuan, B., Rasko, J. J., Larance, M., Ye, D., Fuks, F., & Wong, J. J. L. (2024). Dynamic changes in RNA m6A and 5 hmC influence gene expression programs during macrophage differentiation and polarisation. Cellular and molecular life sciences, 81(1), 229. doi:10.1007/s00018-024-05261-9
  3. 3. Pinello, N., Song, R., Lee, Q., Calonne, E., Larance, M., Fuks, F., & Wong, J. J. L. (2024). A multiomics dataset for the study of RNA modifications in human macrophage differentiation and polarisation. Scientific Data, 11(1), 252. doi:10.1038/s41597-024-03076-8
  4. 4. Fernandes Bonfim, M., Aitchedji, C., Van Goethem, F., Sauvage, L., Poinsot, T., Calonne, E., Deplus, R., Fuks, F., Eizirik, D. L., & Op De Beeck, A. (2024). The N6-methyladenosine RNA epigenetic modification modulates the amplification of coxsackievirus B1 in human pancreatic beta cells. Frontiers in microbiology, 15, 1501061. doi:10.3389/fmicb.2024.1501061
  5. 5. Ma, H., Bizet, M., Soares Da Costa, C., Murisier, F., de Bony, E. J., Wang, M.-K., Yoshimi, A., Lin, K.-T., Riching, K. M., Wang, X., Beckman, J. I., Arya, S., Droin, N., Calonne, E., Hassabi, B., Zhang, Q.-Y., Li, A., Putmans, P., Malbec, L., Hubert, C., Lan, J., Mies, F., Bula Ibula Yanga, Y., Solary, E., Daniels, D., Gupta, Y. K., Deplus, R., Abdel-Wahab, O., Yang, Y.-G., & Fuks, F. (2023). SRSF2 plays an unexpected role as reader of m5C on mRNA, linking epitranscriptomics to cancer. Molecular cell, 83(23), 4239-4254.e10. doi:10.1016/j.molcel.2023.11.003
  6. 6. Dube, G., Tiamiou, A., Bizet, M., Boumahd, Y., Gasmi, I., Crake, R., Bellier, J., Nokin, M. J., Calonne, E., Deplus, R., Wissocq, T., Peulen, O., Castronovo, V., Fuks, F., & Bellahcène, A. (2023). Methylglyoxal: a novel upstream regulator of DNA methylation. Journal of experimental & clinical cancer research : CR, 42(1), 78. doi:10.1186/s13046-023-02637-w
  7. 7. Bizet, M., Defrance, M., Calonne, E., Bontempi, G., Sotiriou, C., Fuks, F., & Jeschke, J. (2022). Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods. Epigenetics, 17(13), 2434-2454. doi:10.1080/15592294.2022.2135201
  8. 8. Lin, X., Swedlund, B., Ton, M.-L. N., Ghazanfar, S., Guibentif, C., Paulissen, C., Baudelet, E., Plaindoux, E., Achouri, Y., Calonne, E., Dubois, C., Mansfield, W., Zaffran, S., Marioni, J. C., Fuks, F., Göttgens, B., Lescroart, F., & Blanpain, C. (2022). Mesp1 controls the chromatin and enhancer landscapes essential for spatiotemporal patterning of early cardiovascular progenitors. Nature cell biology, 24(7), 1114-1128. doi:10.1038/s41556-022-00947-3
  9. 9. Jeschke, J., Collignon, E., Al Wardi, C., Krayem, M., Bizet, M., Jia, Y., Garaud, S., Wimana, Z., Calonne, E., Hassabi, B., Morandini, R., Deplus, R., Putmans, P., Dube, G., Singh, N. K., Koch, A., Shostak, K., Rizzotto, L., Ross, R. L., Desmedt, C., Bareche, Y., Rothé, F., Lehmann-Che, J., Duterque-Coquillaud, M., Leroy, X., Menschaert, G., Teixeira, L., Guo, M., Limbach, P. A., Close, P., Chariot, A., Leucci, E., Ghanem, G., Yuan, B., Willard-Gallo, K., Sotiriou, C., Marine, J.-C., & Fuks, F. (2021). Downregulation of the FTO m6A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors. Nature Cancer, 2(6), 611-628. doi:10.1038/s43018-021-00223-7
  10. 10. De Dieuleveult, M., Bizet, M., Colin, L., Calonne, E., Bachman, M., Li, C., Stancheva, I., Miotto, B., Fuks, F., & Deplus, R. (2021). The chromatin remodelling protein LSH/HELLS regulates the amount and distribution of DNA hydroxymethylation in the genome. Epigenetics, 1-22. doi:10.1080/15592294.2021.1917152
  11. 11. Lan, J., Rajan, N., Bizet, M., Penning, A., Singh, N. K., Guallar, D., Calonne, E., Li Greci, A., Bonvin, E., Deplus, R., Hsu, P. P., Nachtergaele, S., Ma, C., Song, R., Fuentes-Iglesias, A., Hassabi, B., Putmans, P., Mies, F., Menschaert, G., Wong, J. J. L., Wang, J., Fidalgo, M., Yuan, B., & Fuks, F. (2020). Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation. Nature communications, 11(1), 4956. doi:10.1038/s41467-020-18729-6
  12. 12. Detavernier, A., Azouz, A., Shehade, H., Splittgerber, M., Van Maele, L., Nguyen, M., Thomas, S., Achouri, Y., Svec, D., Calonne, E., Fuks, F., Oldenhove, G., & Goriely, S. (2019). Monocytes undergo multi-step differentiation in mice during oral infection by Toxoplasma gondii. Communications Biology, 2(1), 472. doi:10.1038/s42003-019-0718-6
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